species:   Scscl
pid:       PID1648
parent:    Ssc-milR-124
paralog:   
locus:     NW_001820826.1:1391993-1392086
matures:   ['UAAGUCUAGGACUUUCGAUUGUUC', 'AUGAGUAGACUUCUAGCUUUU']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820826.1:1391993-1392086

2 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

       ************************                                   *********************       
AUAUUUCGACUAAGUCUAGGACUUUCGAUUGUUCUUCGGUAUCCUCUUCCAAGGAGGCAGCUAGAAUGAGUAGACUUCUAGCUUUUUGGAUAGC
....(((((..(((.((((((...((..(((((((..(((..((((((...))))))..))))))))))...)).))))))))).)))))....
----------UAAGUCUAGGACUUUCGAUUGUUC------------------------------------------------------------ l=24 a=0 c
-----------------------------------------------------------------AUGAGUAGACUUCUAGCUUUU-------- l=21 a=0 c*
---------CUAAGUCUAGGACUUUCGAUUG--------------------------------------------------------------- l=22 a=1 ma
--------------------------------------------------------------------AGUAGACUUCUAGCUUUUU------- l=19 a=0 ma*

---------CUAAGUCUAGGACUUUCGAUUG--------------------------------------------------------------- l=22 a=1 (ma)
----------------------------UUGUUCUUCGGUAUCCUCUU---------------------------------------------- l=20 a=1 
-------------------------------------------------------------UAGAAUGAGUAGACUUCUAGCU----------- l=22 a=1 
------------------------------------------------------------------UGAGUAGACUUCUAGCUUUUUGG----- l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-110111101100
fn-111
